DNA Sequencing & Microbiome Analysis

Your genomics solution partner for environmental (micro)biome analysis

meliloti provides DNA sequencing, bioinformatics, eDNA and (micro)biome analysis solutions for environmental and agricultural microbiology — built on over 15 years of research and proprietary sample preparation technology.

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Identify

Identify the Organisms

We identify the microbes, plants and animals in environmental samples, their relative abundance, and their functional capabilities using high-throughput sequencing and expert bioinformatics.

Improve

Improve Quality & Processes

We help clients make data-driven decisions to improve biological processes — from agriculture to water treatment and everything in between.

Detect

Detect Warning Signs

We identify and track harmful microorganisms, pathogens and pests that destabilize systems, enabling early intervention before disruptions affect production, compliance, or public health.

Sequencing & analysis by scientists, for researchers

Whether you need microbiome profiling, custom amplicon sequencing, or advanced bioinformatics — our team brings deep domain expertise to every project.

Amplicon Sequencing

Illumina MiSeq sequencing of taxonomic markers (16S, 18S, ITS) and custom amplicons at 30,000 reads per sample. Bacterial, fungal, eukaryal, and phototrophic panels available. 2×250 cycles standard; 2×150 and 2×300 also supported.

From $120 / sample

Shotgun Metagenomics

Whole-community sequencing using Illumina and ONT Nanopore platforms. Assembled genomes, gene annotation, functional enrichment, and bioprospecting. Ideal for discovery-driven research and novel gene identification.

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Bioinformatics

Optimized marker-gene and metagenomic pipelines for your data — sequenced with us or elsewhere. From alpha/beta diversity through indicator species analysis to metatranscriptome workflows. Three tiers of analysis depth available.

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Pathogen Surveillance

Identification and tracking of pathogens in wastewater, air, and agricultural environments. qPCR for high-priority single targets, multiplexed panels for broader screening, and full metagenomic characterization of variant lineages.

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Purpose-built for difficult environmental samples

Our DNA extraction kits and sampling hardware are developed in-house, optimized through years of work with low-biomass and complex environmental matrices.

Sox DNA Extraction Kit

Our flagship extraction kit. Works on soil, water, wastewater, biofilms, air filters, and a wide variety of environmental samples. Outperforms competing kits on DNA yield and quality from challenging matrices.

$520 per kit

Rox DNA Extraction Kit

Optimized for root-associated and rhizosphere samples. Engineered to handle the polyphenolic compounds and humic substances that commonly inhibit downstream molecular applications.

$720 per kit

Plax DNA Extraction Kit

Designed for plant tissue and phyllosphere samples. Enables accurate microbiome profiling from leaf, stem, and root tissue.

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Get Started

Have questions? Talk to a scientist.

Whether you need a quote for sequencing services, want to discuss a research collaboration, or have questions about our DNA extraction kits — we'd like to hear from you.

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Location
Waterloo Region, Ontario